PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Manes.18G015400.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
Family ARF
Protein Properties Length: 954aa    MW: 104918 Da    PI: 5.3516
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Manes.18G015400.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B376.33.5e-24156257199
                          EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEE CS
                   B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFk 83 
                          f+k+lt sd++++g +++p++ ae+        ++++ + ++l+++d++ ++W++++iyr++++r++lt+GW+ Fv  ++Lk+gD+v+F 
  Manes.18G015400.1.p 156 FCKTLTASDTSTHGGFSVPRRAAEKLfpaldytMQPP-T-QELVVRDLHDNTWTFRHIYRGQPKRHLLTTGWSIFVGTKRLKAGDSVLFI 243
                          99*********************999*****954444.4.38************************************************ PP

                          E-SSSEE..EEEEE-S CS
                   B3  84 ldgrsefelvvkvfrk 99 
                            ++++ +l+v+v+r+
  Manes.18G015400.1.p 244 --RDEKSQLLVGVRRA 257
                          ..4577778*****97 PP

2Auxin_resp114.78.1e-38282365183
           Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalk.vkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 
                          aahaa+++s+F+++YnPra++seFv++++k +ka++ ++vsvGmRf m+fete+s +rr++Gt+vg+sd+dp+rWp+SkWr+L+
  Manes.18G015400.1.p 282 AAHAAANRSPFTIFYNPRACPSEFVIPLAKHRKAVYgTQVSVGMRFGMMFETEESGKRRYMGTIVGISDIDPLRWPGSKWRNLQ 365
                          79**********************************9*********************************************97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019361.19E-46143285IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.102.3E-41149270IPR015300DNA-binding pseudobarrel domain
CDDcd100171.90E-22155256No hitNo description
PfamPF023628.3E-22156257IPR003340B3 DNA binding domain
SMARTSM010191.1E-23156258IPR003340B3 DNA binding domain
PROSITE profilePS5086313.042156258IPR003340B3 DNA binding domain
PfamPF065075.4E-33282365IPR010525Auxin response factor
PfamPF023097.6E-10831926IPR033389AUX/IAA domain
PROSITE profilePS5174526.393839923IPR000270PB1 domain
SuperFamilySSF542772.4E-8852918No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009733Biological Processresponse to auxin
GO:0009908Biological Processflower development
GO:0009942Biological Processlongitudinal axis specification
GO:0010305Biological Processleaf vascular tissue pattern formation
GO:0048364Biological Processroot development
GO:0048507Biological Processmeristem development
GO:0005634Cellular Componentnucleus
GO:0016020Cellular Componentmembrane
GO:0042802Molecular Functionidentical protein binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 954 aa     Download sequence    Send to blast
MHFKQKHMMM GSVEEKIKAG GLVGGIQTNL LEEMKLLKEI QDHSGTRKTI NSELWYACAG  60
PLVSLPQVGS LVYYFPQGHS EQVAVSTKRT ATSQIPNYPN LPSQLLCQVH NVTLHADKDT  120
DEIYAQMSLQ PVNSEKDVFP IPDFGLKPSK HPTEFFCKTL TASDTSTHGG FSVPRRAAEK  180
LFPALDYTMQ PPTQELVVRD LHDNTWTFRH IYRGQPKRHL LTTGWSIFVG TKRLKAGDSV  240
LFIRDEKSQL LVGVRRANRQ QTTLPSSVLS ADSMHIGVLA AAAHAAANRS PFTIFYNPRA  300
CPSEFVIPLA KHRKAVYGTQ VSVGMRFGMM FETEESGKRR YMGTIVGISD IDPLRWPGSK  360
WRNLQVEWDE PGCSDKQNRV SPWEIETPES LFIFPSLTSG LKRPLHSGFL GGETEWGNLI  420
KRPLIWLPEN GNGNFPYSTI PNTCSERLLK MLMKPHDNHP GIYESALPEI AASKGTPLDD  480
MKAMQGTVNQ MPQLNQSVAM SVENQTYSQF CASQSNAMIS SSSKINLPGK LHLPCNLENQ  540
TADGISNEKL KSEPDHSTDK LSQVTSVGES NEEKSSSSPT NLQNCGNQMD FQNQNQAQLH  600
AQSSLWSVQP LLEPSGVHPQ QIHISQADSI PLSGSLPFLD TDEWISNPSC ISLPGMYGSS  660
GPLSMFGLQE QSAGLPDPSI PLMNQGLWDQ QLNNLRFLSP GSHLIPLAPQ EPCNLNSSGA  720
KDLSDESNDQ SGIYDTLNID VGNGGSAVID PSVSNVILDE FCTSKGVDFQ NPSDCLVGNF  780
SSSQDVQSQI TSASLADSQA FSQQEFPDSL GGTPSSNVDF EKGNYMQNNS WQQVAPRVRT  840
YTKVQKAGSV GRSIDVSSFR NYEELCSAIE CMFGLEGLLN NPRESGWKLV YVDYENDVLL  900
IGDDPWEEFV GCVRCIRILS PSEVQQMSEE GMKLLNNANI QGLAASVTEG SRA*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldu_A0.093901392Auxin response factor 5
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00153DAPTransfer from AT1G19850Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012073833.10.0PREDICTED: auxin response factor 5 isoform X1
SwissprotP930240.0ARFE_ARATH; Auxin response factor 5
TrEMBLA0A067KLD50.0A0A067KLD5_JATCU; Auxin response factor
STRINGPOPTR_0002s02630.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF89913241
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G19850.10.0ARF family protein